Apt is configured to only report security updates. This is done by pinning priorities in /etc/apt/preferences, where all updates are lower priority than existing installed packages except all security updates are higher priority.
No non-security or kept-back packages will be reported or upgraded without special intervention
Note: Driver installation is probably not required as driver ships with CUDA
* CUDA 8.0 Debian Package
* cuDNN 5.1.10
HDF5 1.10.0 patch1
Per user installation and configuration examples