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These are my notes in my attempt to compile CIVET (a version updated by Daan in February 2015) on a VM running CentOS 6.5:

**1.** When copying the code if links or files in the folder SRC are missing it is ok. You can ignore. All other soft links should be working though.

**2.** Need to make sure to source the init.sh file
>source /quarantine/init.sh

**3.** For my installation I also needed to install Getopt:: Tabular from cpan
>cpan
>install Getopt::Tabular
>quit
but that was before I sourced the init.sh file so that might not be necessary

**4** Because the ssh connection times out, you should install and use screen to run CIVET
>yum -y install screen
%%Might need to also run yum -y upgrade if you only need to upgrade
>screen
Then run the program. If outside screen you can go back to screen by typing;
>screen -r
Then based on the detached screens choose which one to attach:
>screen -r xxxxx.penelope

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