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===== Data Inventory =====

This page documents the requirements for access to a dataset stored on MCIN resources.   Some are available for all to use with no restrictions, but most need the user to sign an agreement and/or be added to a list with the data originitator.
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==== ABCD (new)====

https://data-archive.nimh.nih.gov/abcd
The ABCD Data Repository is a part of the National Institute of Mental Health Data Archive (NDA), a collection of repositories that also includes the RDoC Database (RDoCdb), the National Database for Clinical Trials related to Mental Illness (NDCT), the NIH Pediatric MRI Repository (PedsMRI), and the National Database for Autism Research (NDAR).

  *Path : ace-lab-1.acelab.ca:/home/users/shared/abac
  *Unix read-write group : abac
  *Approval: pending...

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==== ABIDE ====

ABIDE is the Autism Brain Imaging Data Exchange from http://fcon_1000.projects.nitrc.org/indi/abide/abide_I.html
  * License: Creative Commons, Attribution-NonCommercial-Share Alike License
  * Path : ace-storage-2:/data1/Raw_Study_Data/abide
  * Unix group(s) : abide
  * No approval needed, just put in a GLPI ticket to be added to the group 

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==== ABIDE II ====

ABIDE II is the Autism Brain Imaging Data Exchange from http://fcon_1000.projects.nitrc.org/indi/abide/abide_II.html
  * License: Creative Commons, Attribution-NonCommercial-Share Alike License
  * Path : ace-storage-2:/data1/Raw_Study_Data/ABIDE_II
  * Unix group(s) : abide
  * No approval needed, just put in a GLPI ticket to be added to the group 

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==== ADNI ====

ADNI is the Alzheimer’s Disease Neuroimaging Initiative from http://adni.loni.usc.edu

  * Agreement to sign:     http://adni.loni.usc.edu/wp-content/uploads/how_to_apply/ADNI_Data_Use_Agreement.pdf
  * Path :                 ace-storage-2:/data1/Raw_Study_Data/ADNI
  * Unix read-only group : adni
  * Approval :             PJ Toussaint, Alan Evans

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==== COBRE ====

COBRE is the Center for Biomedical Research Excellence from http://cobre.mrn.org

  * License :              Creative Commons, Attribution-NonCommercial-Share Alike License
  * Path :                 ace-storage-2:/data1/Raw_Study_Data/cobre
  * Unix read-only group : cobre
  * Approvals :            No approval needed, permissions are 755 

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==== CONNECTOME ====

CONNECTOME comes from the Connectome Coordination Facility at https://www.humanconnectome.org

  * License :              
  * Path :                 ace-storage-2:/data1/Raw_Study_Data/connectome
  * Unix read-only group : connectome
  * Approvals :             

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==== CoRR ====

Consortium for Reliability and Reproducibility (CoRR) at http://fcon_1000.projects.nitrc.org/indi/CoRR/html/

CoRR includes 33 datasets, of which 32 are currently available for download, consisting of:

    1629 Subjects
    3357 Anatomical Scans
    5093 Resting Functional Scans
    1302 Diffusion Scans
    300 CBF and ASL Scans

  * License : May vary by datasets and providers
  * Path :                 ace-storage-2:/data1/Raw_Study_Data/corr
  * Unix read-only group : corr
  * Approvals :            Reza Adalat 

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==== ICBM ====

ICBM 152 Linear
Linear ICBM Average Brain (ICBM152) Stereotaxic Registration Model

* [[https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/icbm152lin]]

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==== MCIC ====

The MCIC Collection: A Shared Repository of Multi-Modal, Multi-Site Brain Image Data from a Clinical Investigation of Schizophrenia

  * Path        : ace-storage-2:/data1/Raw_Study_Data/mcic

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==== nki-rs ====

* Single active user Joshua Morse <joshua.morse@mail.mcgill.ca>.
* Originally downloaded by Jose Maria Chema Mateos.
* Only using neuroimaging data so does not require a data usage agreement per:

[[http://fcon_1000.projects.nitrc.org/indi/enhanced/access.html]]

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==== PAC 2018 ====

http://www.photon-ai.com/pac

  * Path :                 ace-lab-1.acelab.ca:/home/users/
  * Unix read-write group : pac

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==== RECEPTOR_MAP ====

  * License :              
  * Path :                 ace-storage-2:/data1/Raw_Study_Data/ICMB
  * Unix read-only group : receptor_map
  * Approvals :            Reza Adalat 

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==== Instructions ====

Data Inventory Entries could include:

  * Heading
  * Description
  * Website
  * License or link to license
  * Path (Including server)
  * Unix group https://contacts.acelab.ca/groups.php
  * Permissions - Raw data should be read only in order prevent data loss or alteration, Raw data directories need to allow read and execute in order to allow users and programs to traverse the directory structure.

See the example below

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==== Raw Study Data Example ====

Raw Study Data Example is an example of a data inventory entry. The description tells us a bit about the data, perhaps it's source and so on so that someone reading it gets the general idea of the kind of data it contains

  * Path        : ace-storage-2:/data1/Raw_Study_Data/Example
  * Unix group  : example_group
  * permissions : 0550 (owner: read and execute, group: read and execute, other: no access

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