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Data Inventory

This page documents the requirements for access to a dataset stored on MCIN resources. Some are available for all to use with no restrictions, but most need the user to sign an agreement and/or be added to a list with the data originitator.


ABIDE

ABIDE is the Autism Brain Imaging Data Exchange from http://fcon_1000.projects.nitrc.org/indi/abide/abide_I.html

  • License: Creative Commons, Attribution-NonCommercial-Share Alike License
  • Path : ace-storage-2:/data1/Raw_Study_Data/abide
  • Unix group(s) : abide
  • No approval needed, just put in a GLPI ticket to be added to the group

ABIDE II

ABIDE II is the Autism Brain Imaging Data Exchange from http://fcon_1000.projects.nitrc.org/indi/abide/abide_II.html

  • License: Creative Commons, Attribution-NonCommercial-Share Alike License
  • Path : ace-storage-2:/data1/Raw_Study_Data/ABIDE_II
  • Unix group(s) : abide
  • No approval needed, just put in a GLPI ticket to be added to the group

ADNI

ADNI is the Alzheimer’s Disease Neuroimaging Initiative from http://adni.loni.usc.edu


COBRE

COBRE is the Center for Biomedical Research Excellence from http://cobre.mrn.org

  • License : Creative Commons, Attribution-NonCommercial-Share Alike License
  • Path : ace-storage-2:/data1/Raw_Study_Data/cobre
  • Unix read-only group : cobre
  • Approvals : No approval needed, permissions are 755

CONNECTOME

CONNECTOME comes from the Connectome Coordination Facility at https://www.humanconnectome.org

  • License :
  • Path : ace-storage-2:/data1/Raw_Study_Data/connectome
  • Unix read-only group : connectome
  • Approvals :

CoRR

Consortium for Reliability and Reproducibility (CoRR) at http://fcon_1000.projects.nitrc.org/indi/CoRR/html/

CoRR includes 33 datasets, of which 32 are currently available for download, consisting of:

  1629 Subjects
  3357 Anatomical Scans
  5093 Resting Functional Scans
  1302 Diffusion Scans
  300 CBF and ASL Scans
  • License : May vary by datasets and providers
  • Path : ace-storage-2:/data1/Raw_Study_Data/corr
  • Unix read-only group : corr
  • Approvals : Reza Adalat

ICBM

ICBM 152 Linear Linear ICBM Average Brain (ICBM152) Stereotaxic Registration Model

* https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/icbm152lin


MCIC

The MCIC Collection: A Shared Repository of Multi-Modal, Multi-Site Brain Image Data from a Clinical Investigation of Schizophrenia

  • Path : ace-storage-2:/data1/Raw_Study_Data/mcic

nki-rs

* Single active user Joshua Morse joshua.morse@mail.mcgill.ca. * Originally downloaded by Jose Maria Chema Mateos. * Only using neuroimaging data so does not require a data usage agreement per:

http://fcon_1000.projects.nitrc.org/indi/enhanced/access.html


PAC 2018

http://www.photon-ai.com/pac

  • Path : ace-lab-1.acelab.ca:/home/users/
  • Unix read-write group : pac

RECEPTOR_MAP

  • License :
  • Path : ace-storage-2:/data1/Raw_Study_Data/ICMB
  • Unix read-only group : receptor_map
  • Approvals : Reza Adalat

Instructions

Data Inventory Entries could include:

  • Heading
  • Description
  • Website
  • License or link to license
  • Path (Including server)
  • Permissions - Raw data should be read only in order prevent data loss or alteration, Raw data directories need to allow read and execute in order to allow users and programs to traverse the directory structure.

See the example below


Raw Study Data Example

Raw Study Data Example is an example of a data inventory entry. The description tells us a bit about the data, perhaps it's source and so on so that someone reading it gets the general idea of the kind of data it contains

  • Path : ace-storage-2:/data1/Raw_Study_Data/Example
  • Unix group : example_group
  • permissions : 0550 (owner: read and execute, group: read and execute, other: no access

data_inventory.txt · Last modified: 2018/03/01 15:36 by ppatterson