software_listing
====== Differences ====== This shows you the differences between two versions of the page.
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software_listing [2018/01/16 19:58] csteel |
software_listing [2018/01/30 14:34] (current) xteng |
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| * BigBrain on line (https://bigbrain.loris.ca/main.php) | * BigBrain on line (https://bigbrain.loris.ca/main.php) | ||
| * BrainSuite16a1 (http://brainsuite.org/) | * BrainSuite16a1 (http://brainsuite.org/) | ||
| + | * BrainView | ||
| * Caret | * Caret | ||
| * CIVET | * CIVET | ||
| Line 18: | Line 19: | ||
| * HCP Workbench (https://www.humanconnectome.org/software/get-connectome-workbench.html) | * HCP Workbench (https://www.humanconnectome.org/software/get-connectome-workbench.html) | ||
| * MATLAB Compiler Runtime R2015b (https://www.mathworks.com/products/compiler/mcr/) | * MATLAB Compiler Runtime R2015b (https://www.mathworks.com/products/compiler/mcr/) | ||
| + | * Matlab based imaging tools | ||
| + | * brainstorm3[[https://github.com/brainstorm-tools/brainstorm3]] | ||
| + | * eeglab [[https://sccn.ucsd.edu/wiki/How_to_download_EEGLAB]] | ||
| + | * fmristat [[http://www.math.mcgill.ca/keith/fmristat/]] | ||
| + | * surfstat [[http://www.math.mcgill.ca/keith/surfstat/]] | ||
| + | * niak ( https://www.nitrc.org/projects/niak/ ) | ||
| + | * spm8 [[http://www.fil.ion.ucl.ac.uk/spm/software/spm8/]] | ||
| + | * spm12 [[http://www.fil.ion.ucl.ac.uk/spm/software/spm12/]] | ||
| * MINC 1 + 2 | * MINC 1 + 2 | ||
| * Minc Tools / Display | * Minc Tools / Display | ||
| * pymin | * pymin | ||
| * MRICron tools (http://people.cas.sc.edu/rorden/mricron/install.html) | * MRICron tools (http://people.cas.sc.edu/rorden/mricron/install.html) | ||
| + | * mri tutorials | ||
| * Mrtrix3 (http://mrtrix.readthedocs.io/en/latest/installation/linux_install.html) | * Mrtrix3 (http://mrtrix.readthedocs.io/en/latest/installation/linux_install.html) | ||
| - | * SPM | + | * neurosynth [[https://pkgs.org/download/python-neurosynth]] |
| + | * openmp | ||
| + | * RMINC [[https://github.com/Mouse-Imaging-Centre/RMINC]] | ||
| + | * SPM [[https://en.wikibooks.org/wiki/SPM/Installation_on_64bit_Linux]] | ||
| + | * JEMRIS (http://www.jemris.org/) | ||
| + | |||
| + | === Neurodebian Packages === | ||
| + | |||
| + | * FSL | ||
| + | * AFNI | ||
| + | * pyMVPA | ||
| + | * nibabel | ||
| + | * mricron | ||
| + | * psychtoolbox | ||
| + | * odds and ends, converters, viewers and so on. | ||
| === Utilities === | === Utilities === | ||
| + | * apticron | ||
| * Anaconda, miniconda and conda | * Anaconda, miniconda and conda | ||
| * FileZilla (https://filezilla-project.org/) | * FileZilla (https://filezilla-project.org/) | ||
| + | * ethtool | ||
| * GCC version to 4.8 if possible (https://gcc.gnu.org/gcc-4.8/) | * GCC version to 4.8 if possible (https://gcc.gnu.org/gcc-4.8/) | ||
| * GIMP | * GIMP | ||
| Line 61: | Line 88: | ||
| * SublimeText | * SublimeText | ||
| * SurfStat | * SurfStat | ||
| + | * unattended-upgrades | ||
| * Vim | * Vim | ||
| * VirtualBox | * VirtualBox | ||
| Line 102: | Line 130: | ||
| * [[https://en.wikibooks.org/wiki/MINC]] | * [[https://en.wikibooks.org/wiki/MINC]] | ||
| - | - Minc viewers such as Display, Register, BrainView, ModelGui (Andrew Reid's) | + | - Minc viewers such as: |
| + | * Display | ||
| + | * Register | ||
| + | * BrainView [[https://github.com/sghanavati/brain-view2]] | ||
| + | * ModelGui (Andrew Reid's) | ||
| === SGE === | === SGE === | ||
| Line 125: | Line 157: | ||
| === Development, Programming and Scripting === | === Development, Programming and Scripting === | ||
| + | * adacity | ||
| + | * build-essential | ||
| * C | * C | ||
| + | * cmake | ||
| + | * filezilla | ||
| * GNC Make | * GNC Make | ||
| + | * gparted | ||
| + | * latex | ||
| + | * pbzip, pigz, rar, p7zip-full | ||
| + | * pdftk, qpdf | ||
| * Perl | * Perl | ||
| * Python | * Python | ||
| + | * imagemagick | ||
| * R | * R | ||
| + | * renameutils | ||
| + | * scribus | ||
| + | * sox | ||
| + | * sshfs | ||
| + | * tree | ||
| + | * vim | ||
| + | * Virtualbox | ||
| + | * watch | ||
| === RMINC === | === RMINC === | ||
| Line 169: | Line 218: | ||
| * [[http://www.itksnap.org/pmwiki/pmwiki.php|itk-SNAP]] | * [[http://www.itksnap.org/pmwiki/pmwiki.php|itk-SNAP]] | ||
| + | * [[http://www.itksnap.org/pmwiki/pmwiki.php?n=SourceCode.SourceCode]] | ||
| === Human Connectome Project (HCP) connectome workbench === | === Human Connectome Project (HCP) connectome workbench === | ||
software_listing.1516132723.txt.gz · Last modified: 2018/01/16 19:58 by csteel
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