====== Differences ====== This shows you the differences between two versions of the page.
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software_listing [2018/01/16 20:06] csteel |
software_listing [2018/01/30 14:34] (current) xteng |
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* MATLAB Compiler Runtime R2015b (https://www.mathworks.com/products/compiler/mcr/) | * MATLAB Compiler Runtime R2015b (https://www.mathworks.com/products/compiler/mcr/) | ||
* Matlab based imaging tools | * Matlab based imaging tools | ||
- | * brainstorm3 | + | * brainstorm3[[https://github.com/brainstorm-tools/brainstorm3]] |
- | * eeglab | + | * eeglab [[https://sccn.ucsd.edu/wiki/How_to_download_EEGLAB]] |
- | * fmristat | + | * fmristat [[http://www.math.mcgill.ca/keith/fmristat/]] |
- | * surfstat | + | * surfstat [[http://www.math.mcgill.ca/keith/surfstat/]] |
- | * niak | + | * niak ( https://www.nitrc.org/projects/niak/ ) |
- | * spm12 | + | * spm8 [[http://www.fil.ion.ucl.ac.uk/spm/software/spm8/]] |
+ | * spm12 [[http://www.fil.ion.ucl.ac.uk/spm/software/spm12/]] | ||
* MINC 1 + 2 | * MINC 1 + 2 | ||
* Minc Tools / Display | * Minc Tools / Display | ||
* pymin | * pymin | ||
* MRICron tools (http://people.cas.sc.edu/rorden/mricron/install.html) | * MRICron tools (http://people.cas.sc.edu/rorden/mricron/install.html) | ||
+ | * mri tutorials | ||
* Mrtrix3 (http://mrtrix.readthedocs.io/en/latest/installation/linux_install.html) | * Mrtrix3 (http://mrtrix.readthedocs.io/en/latest/installation/linux_install.html) | ||
+ | * neurosynth [[https://pkgs.org/download/python-neurosynth]] | ||
* openmp | * openmp | ||
- | * SPM | + | * RMINC [[https://github.com/Mouse-Imaging-Centre/RMINC]] |
+ | * SPM [[https://en.wikibooks.org/wiki/SPM/Installation_on_64bit_Linux]] | ||
+ | * JEMRIS (http://www.jemris.org/) | ||
=== Neurodebian Packages === | === Neurodebian Packages === | ||
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=== Utilities === | === Utilities === | ||
+ | * apticron | ||
* Anaconda, miniconda and conda | * Anaconda, miniconda and conda | ||
* FileZilla (https://filezilla-project.org/) | * FileZilla (https://filezilla-project.org/) | ||
+ | * ethtool | ||
* GCC version to 4.8 if possible (https://gcc.gnu.org/gcc-4.8/) | * GCC version to 4.8 if possible (https://gcc.gnu.org/gcc-4.8/) | ||
* GIMP | * GIMP | ||
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* SublimeText | * SublimeText | ||
* SurfStat | * SurfStat | ||
+ | * unattended-upgrades | ||
* Vim | * Vim | ||
* VirtualBox | * VirtualBox | ||
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* [[https://en.wikibooks.org/wiki/MINC]] | * [[https://en.wikibooks.org/wiki/MINC]] | ||
- | - Minc viewers such as Display, Register, BrainView, ModelGui (Andrew Reid's) | + | - Minc viewers such as: |
+ | * Display | ||
+ | * Register | ||
+ | * BrainView [[https://github.com/sghanavati/brain-view2]] | ||
+ | * ModelGui (Andrew Reid's) | ||
=== SGE === | === SGE === | ||
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* [[http://www.itksnap.org/pmwiki/pmwiki.php|itk-SNAP]] | * [[http://www.itksnap.org/pmwiki/pmwiki.php|itk-SNAP]] | ||
+ | * [[http://www.itksnap.org/pmwiki/pmwiki.php?n=SourceCode.SourceCode]] | ||
=== Human Connectome Project (HCP) connectome workbench === | === Human Connectome Project (HCP) connectome workbench === |